Index

A

absolute_dry_mass_sphere() (in module drymass.anasphere) add_cbar() (in module drymass.cli.plot)

analyze_sphere() (in module drymass.anasphere) approx_bg() (in module drymass.search) available_thresholds (in module drymass.threshold)

B

BG_DEFAULT_KW (in module drymass.extractroi)

C

ConfigFile (class in drymass.cli.config)

convert() (in module drymass.converter)

D

drymass.anasphere module drymass.cli module drymass.cli.config module drymass.cli.definitions.config (in module drymass.cli.config) drymass.cli.dialog module drymass.cli.parse_funcs module drymass.cli.plot module

drymass.converter module drymass.extractroi module drymass.roi module drymass.search module drymass.threshold module drymass.util module

E

EdgeDetectionFailedWarning

extract_roi() (in module drymass.extractroi)

F

fbool() (in module drymass.cli.parse_funcs) FILE_CONFIG (in module drymass.cli.config) FILE_ROI_DATA_H5 (in module drymass.extractroi) FILE_ROI_DATA_TIF (in module drymass.extractroi) FILE_SENSOR_DATA_H5 (in module drymass.converter) FILE_SENSOR_DATA_TIF (in module drymass.converter)

FILE_SLICES (in module drymass.extractroi) FILE_SPHERE_DATA (in module drymass.anasphere) FILE_SPHERE_STAT (in module drymass.anasphere) fintlist() (in module drymass.cli.parse_funcs) float01() (in module drymass.cli.parse_funcs) float_or_str() (in module drymass.cli.parse_funcs) floattuple_or_one() (in module drymass.cli.parse_funcs)

G

get_background() (in module drymass.converter)

H

h5series2tif() (in module drymass.converter)

hash_file() (in module drymass.util) hash_object() (in module drymass.util)

I

image2mask() (in module drymass.threshold) input_setting() (in module drymass.cli.dialog)

int_or_path() (in module drymass.cli.parse_funcs) is_ignored_roi() (in module drymass.extractroi) is_series_file() (in module drymass.util)

L

lcstr() (in module drymass.cli.parse_funcs)

M

main() (in module drymass.cli.dialog) module drymass.anasphere drymass.cli drymass.cli.config drymass.cli.dialog drymass.cli.parse_funcs drymass.cli.plot drymass.converter drymass.extractroi drymass.roi drymass.search drymass.threshold drymass.util

O

obj2bytes() (in module drymass.util)

OUTPUT_SUFFIX (in module drymass.cli.dialog)

P

parse() (in module drymass.cli.dialog) plot_image() (in module drymass.cli.plot)

plot_qpi_phase() (in module drymass.cli.plot) plot_qpi_sphere() (in module drymass.cli.plot)

R

recursive_search() (in module drymass.cli.dialog) relative_dry_mass() (in module drymass.anasphere)

remove_section() (drymass.cli.config.ConfigFile method) ROIManagerWarning

S

search_objects_base() (in module drymass.search) search_phase_objects() (in module drymass.search)

set_value() (drymass.cli.config.ConfigFile method) strlist() (in module drymass.cli.parse_funcs) strlist_vsort() (in module drymass.cli.parse_funcs)

T

threshold_dict (in module drymass.threshold) threshold_drymass_nuclei() (in module drymass.threshold)

threshold_li() (in module drymass.threshold) transfer_meta_data() (in module drymass.cli.dialog) tupletupleint() (in module drymass.cli.parse_funcs)

U

update() (drymass.cli.config.ConfigFile method)