List of changes in-between DryMass releases.

version 0.3.1

  • bump version because of regression fixed in qpformat 0.2.1
  • feat: flush statistics file during writing

version 0.3.0

  • drop support for Python 3.5
  • ref: background correction in uses background indices starting at 0 while the CLI keeps using indices starting at 1
  • fix: hologram keyword arguments were not used for background correction
  • fix: case where index-based background correction does not work
  • feat: sphere analysis is picked up where left off in previous run
  • command line interface:
    • fix: allow white spaces for input data path argument
    • fix: improve verbosity of status messages
  • docs: add troubleshooting section

version 0.2.0

  • feat: reuse computed ROI data from previous runs
  • ref: update [roi] configuration key names to reflect pixel units: “dist border px”, “exclude overlap px”, “pad border px”
  • fix: improve verbosity of error messages
  • fix: config value “[roi] size variation” must be in interval [0,1]
  • fix: handle ROIs with failed edge detection in “dm_analyze_sphere”

version 0.1.4

  • feat: add local thresholding step before segmentation
  • fix: check number of qpimages in sensor_data.h5 during dm_convert
  • fix: “exclude overlap” only used for background image
  • fix: not possible to analyze phasics data folder when raw data is present (qpformat 0.1.5)

version 0.1.3

  • automatically fix inverted ranges when loading “roi_slices.txt”
  • remove “holo” section from drymass.cfg if not relevant
  • allow user-defined ROI selection via “[roi] enabled = False”
  • added hologram analysis parameter tuning (qpimage 0.1.6)
  • added 2D model fitting to sphere analysis (qpsphere 0.1.4)
  • fixed cfg_funcs.int_or_str

version 0.1.2

  • allow to disable sensor image tif export
  • support input QPI data with different shapes
  • fixed wrong assumption about definition of dry mass in cells (water vs. intracellular salt solution)
  • allow to use separate file or series index for background correction with experimental data (#6)
  • small visualization improvements

version 0.1.1

  • add file name to image identifier and update plotting (#4)
  • renamed “object” to “identifier” in statistics output
  • binary-based background correction (manual or automated threshold)
  • allow to disable background correction with “[bg] enabled = False”
  • ask for missing meta data keys in CLI only when they are required

version 0.1.0

  • initial release