DryMass
0.2.0

Contents:

  • Introduction
  • Theory Notes
  • Getting started
  • Tutorials
  • Code examples
  • Code reference
  • Changelog
  • Bilbliography
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DryMass documentation¶

DryMass is a user-friendly quantitative phase imaging analysis software. This is the documentation of DryMass version 0.2.0.

Contents:

  • Introduction
    • What is DryMass?
    • Quantitative phase imaging
  • Theory Notes
    • Computation of cell dry mass
      • Definition
      • Relative and absolute dry mass
      • Notes and gotchas
  • Getting started
    • Installing DryMass
      • Upgrade
      • Known issues
    • Command line interface
      • dm_convert
      • dm_extract_roi
      • dm_analyze_sphere
    • Configuration file
      • [bg] Background correction
      • [holo] Hologram analysis
      • [meta] Image meta data
      • [output] Supplementary data output
      • [roi] Extraction of regions of interest
      • [specimen] Specimen parameters
      • [sphere] Sphere-based image analysis
  • Tutorials
    • T1: Bead analysis (CLI)
      • Introduction
      • Prerequisites
      • Execute dm_analyze_sphere
      • Examine the results
      • Post-processing
    • T2: HL60 cell analysis (CLI)
      • Introduction
      • Prerequisites
      • Find regions of interest
      • Set 2nd order polynomial background correction
      • Perform sphere analysis
      • Plot the results
      • Discussion
  • Code examples
    • Dry mass computation with radial inclusion factor
    • Comparison of relative and absolute dry mass
  • Code reference
    • cfg_funcs
  • Changelog
    • version 0.2.0
    • version 0.1.4
    • version 0.1.3
    • version 0.1.2
    • version 0.1.1
    • version 0.1.0
  • Bilbliography

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

© Copyright 2017, Paul Müller. Revision bd5b225d.

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