Troubleshooting¶
Freezing / no output¶
If the CLI freezes and you see a blinking cursor for a very long time without any files being created or changed in the output directory (_dm appended to the input data set):
Remove all files in the output directory, except for drymass.cfg.
Run the analysis again.
Amplitude sensor image is over-saturated (Fiji)¶
When you open the sensor_data.tif
file generated by DryMass with
Fiji, you might encounter a situation where the
phase data (channel 1) looks fine, but the amplitude data (channel 2)
is over-saturated.
The reason for this is that Fiji does not automatically adjust the brightness and contrast for this multi-channel image series. The solution is to adjust the brightness manually. Go to Image | Adjust… | Brightness/Contrast and click the Auto button.
None of the above¶
Please create an issue on GitHub with a screenshot (or copy-paste) of the error message.